Template:ListUserTasks

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[[{{{1}}}]]

Task Name Start Date End Date Description Hours Task Status Request Request Status

Corecosting support in November 1 November 2024 30 November 2024
Finished Corecosting 2023 Closed

future development 1 September 2024 16 September 2024
Adding a last step after trust4
Finished Continuous development for tapestri pipeline Accepted

Standard analysis with DE 21 August 2024 12 September 2024
Finished Agendo 2024BD285. GU BOKEELV_07. mRNA-seq 20 samples, mm39 Accepted

ataceseq comparison 1 August 2024 16 September 2024
Finished ATACseq - Comparison between enzymes and buffers (GENOMICSTEST_22) 2024BD280 Accepted

RNA-seq data processing 1 August 2024 7 August 2024
Finished RNA-seq data processing Completed

more development 16 July 2024 16 September 2024
adapting new cluster, conversion, trust4 etc
Finished Continuous development for tapestri pipeline Accepted

Trimmed reads and used BBtools for counting (Bowtie or Bowtie2 didn't work) and mageck couldn't be used because sgRNA after trimming didn't start at 5' 1st position 7 June 2024 14 June 2024
Finished Agendo 2024BD283. GU AYTESALV_02. QC of sgRNAs (GeCKO mouse library) in 2 versions. Closed

Development and support in June 1 June 2024 30 June 2024
Finished Qsample development 2024 Q1-Q2 Closed

Analysis_ExomeCapture_DIASMAF_03 (2024BD282) 1 May 2024 10 June 2024
see title
Finished GU requests Q1-Q2 2024: (1) Truseq adaptors (2024BD272), (2) New kits Stranded total RNA (2024BD269), (3) Analysis_ExomeCapture_DIASMAF_03 (2024BD282), (4) ATACseq - Comparison between enzymes and buffers (2024BD280) Accepted

Development and support - May / June 1 May 2024 30 June 2024
Finished Daedalus development 2024 Q1-Q2 Accepted

Development and support in May 1 May 2024 31 May 2024
Finished Qsample development 2024 Q1-Q2 Closed

Pipelins & analysis 22 April 2024 13 June 2024
Finished (1) Transfer RNA-seq allele-spec pipeline to DSL2. (2) Methylation pipeline & data analysis. Closed

Daedalus development April 1 April 2024 30 April 2024
Development during April
Finished Daedalus development 2024 Q1-Q2 Accepted

Development and support in April 1 April 2024 30 April 2024
Finished Qsample development 2024 Q1-Q2 Closed

whole analysis 12 March 2024 10 June 2024
12 samples
Finished Xenopus oogenesis (2024BD277) Accepted

Counting sgRNA 4 March 2024 11 March 2024
It was supposed to easy and strightforward. But the experiment was unsuccessful and we spent many hours with Irene to figure out what was going on. I still charged a standard for minimum for this analysis.
Finished Agendo 2024BD271. GU AYTESALV_01. QC of sgRNAs (GeCKO mouse library) in 2 versions Closed

Daedalus - Development March 1 March 2024 31 March 2024
Development
Finished Daedalus development 2024 Q1-Q2 Accepted

Development and support in March 1 March 2024 31 March 2024
Finished Qsample development 2024 Q1-Q2 Closed

2 independent analyses. STandard. They didn't ask for anything else. 12 February 2024 22 March 2024
Finished Agendo 2024BD268. GU SANCHEZMON_02. ChIP-seq. Human Closed

New kits Stranded total RNA (2024BD269) 12 February 2024 10 June 2024
Finished GU requests Q1-Q2 2024: (1) Truseq adaptors (2024BD272), (2) New kits Stranded total RNA (2024BD269), (3) Analysis_ExomeCapture_DIASMAF_03 (2024BD282), (4) ATACseq - Comparison between enzymes and buffers (2024BD280) Accepted

Development and support in February 1 February 2024 29 February 2024
Finished Qsample development 2024 Q1-Q2 Closed

whole analysis 1 February 2024 19 March 2024
Finished New kits Stranded total RNA (2024BD269) Discarded

whole analysis 1 February 2024 13 March 2024
Finished Truseq adaptors (2024BD272) Discarded

Daedalus retaking of the project during Q1 1 February 2024 29 February 2024
Retaking of the project and different developments - February
Finished Daedalus development 2024 Q1-Q2 Accepted

whole analysis 25 January 2024 14 March 2024
Finished Setting up new technology (2023BD259) Closed

... further results
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