Template:ListUserTasks

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User:Thermoso

Task Name Start Date End Date Description Hours Task Status Request Request Status

Corecosting support in November 1 November 2024 30 November 2024
Finished Corecosting 2023 Closed

Estimated development associated to Angular widget creation and associated issues 19 November 2023 31 December 2023
Finished Qsample development and preparation for production and publication 2023 - Part 2 Accepted

Ongoing development in October 14 November 2023
Qsample development
Finished Qsample development and preparation for production and publication 2023 - Part 2 Accepted

Support for containerization and running 1 November 2023 30 November 2023
Allowed installation in a container environment
Finished Development of the Nextflow tapestri pipeline [2023BD055] Closed

November development associated to Qsample 1 November 2023 17 November 2023
Finished Qsample development and preparation for production and publication 2023 - Part 2 Accepted

Mirroring maintenance in fall 1 October 2023 31 December 2023
Different maintenance tasks
Finished Mirroring 2023 Closed

Course and preparation 4 September 2023 15 September 2023
Finished Nextflow hands-on course for EGA Closed

Follow-up development in September 1 September 2023 30 September 2023
Follow-up development
Finished Qsample development and preparation for production and publication 2023 - Part 2 Accepted

Different developments during August and solving production problems 1 August 2023 31 August 2023
Finished Qsample development and preparation for production and publication 2023 - Part 2 Accepted

Cleaning 3 July 2023 3 July 2023
Cleaning of non-used services
Finished Corecosting 2023 Closed

Corecosting various support during summer 1 July 2023 30 September 2023
Finished Corecosting 2023 Closed

Development of QSample 1 July 2023 30 November 2023
Different Qsample developments to make it work for production
Finished Qsample development and preparation for production and publication 2023 - Part 2 Accepted

Mirror maintenance in summer 1 July 2023 30 September 2023
Different maintenance tasks of mirroring during summer
Finished Mirroring 2023 Closed

Support to deployment into production 22 June 2023
Support to deployment into production. Documentation, accompanying Roger and NGINX recipes
Finished Peptide stability dockerization and deployment to production Closed

Fixes from Daedalus meetings and follow-up 1 May 2023 30 June 2023
Finished Daedalus 2023 Accepted

Setup of backend side 26 April 2023 12 May 2023
Setup of container for API side and integration
Finished Peptide stability dockerization and deployment to production Closed

Setup of client side 24 April 2023 12 May 2023
Setup Docker for client side for different modes
Finished Peptide stability dockerization and deployment to production Closed

Run of different datasets: ENSEMBL, UniProt, and so on. 1 January 2023 30 June 2023
Regular runs
Finished Mirroring 2023 Closed

Scripts maintenance 1 January 2023 30 June 2023
Small script maintenance for ensuring the service
Finished Mirroring 2023 Closed

Handling of different issues with backend side 1 January 2023 30 June 2023
Finished Qsample development and preparation for production and publication 2023 Closed

Support for new fees 1 January 2023 30 June 2023
This includes regular work, but also adaptation for situation with CRG - CNAG split.
Finished Corecosting 2023 Closed

Handling issues mainly from the client side 1 January 2023 30 June 2023
Finished Qsample development and preparation for production and publication 2023 Closed

Upgrade of UniProt GOA 1 December 2022 29 December 2022
Finished Mirroring 2022 Q3-Q4 Closed

ECR - Pyspark testing in AWS 1 December 2022
Testing of a Pyspark execution in AWS for big data used in our common mirroring https://github.com/toniher/terraform-emr-pyspark
Finished AWS & Terraform development and support Closed

Cleaning, linting and styling of code 24 November 2022 30 November 2022
Following LIMS development approach for ensuring code style shared by different people, introduced linting and quality recommendations for ongoing LIMS related projects (flake8, black, isort and precommits)

https://sinead.tech/code/python-black-and-flake8-pre-commit-hooks/

https://medium.com/@jackklpan/auto-format-and-lint-by-black-isort-flake8-in-vs-visual-studio-code-a62a3f5d940e
Finished Genomics LIMS and Genomics Unit support - 2022 Q3Q4 Closed

... further results

Bioinformatics Core Facility @ CRG — 2011-2024