Template:ListUserTasks

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Task Name	Start Date	End Date	Description	Hours	Task Status	Request	Request Status
Biocore wiki support, dev and maintenance	26 November 2009	4 June 2012			Finished	Generic Wiki development & support	Closed
Proteowiki	1 March 2010	1 May 2012	Time in Proteowiki		Finished	Generic Wiki development & support	Closed
Scientific software support	1 June 2010		Support to users in the scientific software installation		Finished	Scientific software support/evaluation	Closed
Software evaluation	1 June 2010		Evaluation of the different licensed software alternatives currently present at the CRG		Finished	Scientific software support/evaluation	Closed
User support for Protein Service Wiki	1 January 2011	4 June 2012	User support for Protein Service team using the wiki		Finished	Generic Wiki development & support	Closed
User support for project-specific wikis	1 May 2011	4 June 2012			Finished	Generic Wiki development & support	Closed
Development of project-specific wikis	1 May 2011	4 June 2012			Finished	Generic Wiki development & support	Closed
Ensembl Genome/Proteome/Transcriptome: Scripts implementation	1 July 2011	31 July 2011	Implementation of the scripts to the Ensembl mirror of Genome/Proteome/Transcriptome		Finished	Database mirroring	Closed
Filtering reads	1 July 2011	31 July 2011	Filtering reads by quality. This is necessary to improve the quality of the De novo transcriptome assembly		Finished	Lynx transcriptome assemby	Closed
Great work	10 July 2011	11 July 2011	Ieaaa!		Finished	One example of Request	Discarded
Another try	12 July 2011	13 July 2011	Done a lot		Finished	One example of Request	Discarded
MET0027	26 July 2011	26 July 2011	MET0027 project QC analysis for Illumina Infinium Methylation array 27k.		Finished	MET0027	Closed
Standard chipseq	27 July 2011	10 August 2011	2 sample vs 1 control		Finished	Lange's chipseq (phf19)	Closed
Standard chipseq	27 July 2011	5 August 2011	Standard chipseq of 2 samples vs 1 control (Ig)		Finished	Sarah Kinkley's chipseq (spok1)	Closed
sitepro and custom sitepro	30 July 2011	5 August 2011	We used sitepro on peaks and we developed another strategy to implement a similar analysis but normalizing the signal. We compared against random TSS and random portion of the genome.		Finished	Lange's chipseq (phf19)	Closed
De novo transcriptome assembly (tissue-based)	31 July 2011	1 November 2011	De novo transcriptome assembly using Trinity for each tissue independently		Finished	Lynx transcriptome assemby	Closed
chipseq 1	1 August 2011	8 August 2011	Chipseq using Cosma IgG as control. Sample analyzed were Cbx6, RING_1B_KO_Cbx7 and EED_KO_Cbx7. We provided a special annotation extending the peaks to 5 kb.		Finished	Lluis Morey's chipseq (jul-2011)	Closed
chipseq 2	1 August 2011		Chipseq on EB9_RING1B, EB9_cbx4, EB9_cbx2 using EB9_IgG (EB9 cell lines). Genome of reference is mouse. We received sequences once per week...		Finished	Lluis Morey's chipseq (jul-2011)	Closed
Chipseq 1	1 August 2011	8 September 2011	Custom chipseq analysis following a Cell stem cell paper (Karimi MM et al. 2011)		Finished	Cosma Chipseq	Closed
Gene annotation of peaks	10 August 2011	10 August 2011			Finished	Sarah Kinkley's chipseq (spok1)	Closed
Chipseq 1	1 September 2011	17 October 2011	Standard chipseq on 2 samples vs 2 KO		Finished	Lopez chipseq	Closed
NCBI mirrors: Scripts implementation	1 September 2011	30 September 2011	Mirror of files at ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/. Format for Blast. Implementation of the scripts		Finished	Database mirroring	Closed
venn diagram	5 September 2011	5 September 2011	Venn diagram for 3 list of genes		Finished	Lluis Morey's chipseq (jul-2011)	Closed
chipseq	6 September 2011	7 September 2011	- Zrf1-FLAG_24 vs Ctrl-FLAG_24 - Zrf1-FLAG_0 vs Ctrl-FLAG_0 - gene annotation x2 - gene ontology x2		Finished	Aloia's chipseq (ZRF1)	Closed
The whole analysis	10 September 2011	29 September 2011			Finished	Mympn gene re-annotation	Closed

... further results

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