Template:ListUserTasks

[[{{{1}}}]]

	Title	Date Start	Date End	Description	Accumulated hours	Request Reference
Task:20110713130647@20110713164150	Great work	10 July 2011	11 July 2011	Ieaaa!		Request:20110713130647
Task:20110714105227@20110927160810	Reverse-engineering of bacterial gene regulatory networks					Request:20110714105227
Task:20110726104842@20110726105251	MET0027	26 July 2011	26 July 2011	MET0027 project QC analysis for Illumina Infinium Methylation array 27k.		Request:20110726104842
Task:20110727111856@20110905152402	venn diagram	5 September 2011	5 September 2011	Venn diagram for 3 list of genes		Request:20110727111856
Task:20110901161655@20110901162156	Chipseq 1	1 August 2011	8 September 2011	Custom chipseq analysis following a Cell stem cell paper (Karimi MM et al. 2011)		Request:20110901161655
Task:20110901164807@20110929123415	The whole analysis	10 September 2011	29 September 2011			Request:20110901164807
Task:20110906114109@20110906114505	chipseq	6 September 2011	7 September 2011	- Zrf1-FLAG_24 vs Ctrl-FLAG_24 - Zrf1-FLAG_0 vs Ctrl-FLAG_0 - gene annotation x2 - gene ontology x2		Request:20110906114109
Task:20110922110927@20110922111044	QC of input file	21 September 2011	21 September 2011	QC was performed by using fastQC tool.		Request:20110922110927
Task:20110922110927@20110923091140	fastq filtering	22 September 2011	22 September 2011	creating perl script to filter fastq file according to phred qual		Request:20110922110927
Task:20111010092540@20111014142329	Chip-seq basic analysis	12 October 2011	13 October 2011	4 samples + 1 control		Request:20111010092540
Task:20110901162757@20110901163445	Chipseq 1	1 September 2011	17 October 2011	Standard chipseq on 2 samples vs 2 KO		Request:20110901162757
Task:20110727111147@20111018140213	Standard chipseq	27 July 2011	10 August 2011	2 sample vs 1 control		Request:20110727111147
Task:20110727112333@20111018142006	Standard chipseq	27 July 2011	5 August 2011	Standard chipseq of 2 samples vs 1 control (Ig)		Request:20110727112333
Task:20110727112333@20111018142342	Gene annotation of peaks	10 August 2011	10 August 2011			Request:20110727112333
Task:20110922110927@20111018142843	fastq filtering 2	28 September 2011	10 October 2011	Creating scripts for fastq filtering and removing "single" mate pairs		Request:20110922110927
Task:20110922110927@20111018143057	QC on filtered reads	1 October 2011	5 October 2011	QC was done with fastqc		Request:20110922110927
Task:20111010092540@20111014142719	chipseq custom overlap	14 October 2011		Size distribution of peaks. Overlap between peaks of CDPY and CK4. Overlap between peaks of CK4 and 23K4. Overlap between peaks of CK4 and MSKK4. Gene list of every sample.		Request:20111010092540
Task:20110713130647@20110713185713	Another try	12 July 2011	13 July 2011	Done a lot		Request:20110713130647
Task:20110727111147@20111018141207	sitepro and custom sitepro	30 July 2011	5 August 2011	We used sitepro on peaks and we developed another strategy to implement a similar analysis but normalizing the signal. We compared against random TSS and random portion of the genome.		Request:20110727111147
Task:20110727111856@20110901145849	chipseq 1	1 August 2011	8 August 2011	Chipseq using Cosma IgG as control. Sample analyzed were Cbx6, RING_1B_KO_Cbx7 and EED_KO_Cbx7. We provided a special annotation extending the peaks to 5 kb.		Request:20110727111856
Task:20110727111856@20110901151742	chipseq 2	1 August 2011		Chipseq on EB9_RING1B, EB9_cbx4, EB9_cbx2 using EB9_IgG (EB9 cell lines). Genome of reference is mouse. We received sequences once per week...		Request:20110727111856
Task:20111010092540@20111024143717	gene-set enrichment	21 October 2011		We used david website to check for enrichment in some gene sub-groups.		Request:20111010092540
Task:20111010092540@20111102103808	retrieve genes on TSS	31 October 2011	3 November 2011	Researchers asked to retrieve genes with TSS overlapping the peaks and to overlap them.		Request:20111010092540
Task:20111021163325@20111121172033	The Bm1 role in muscle satellite cells					Request:20111021163325
Task:20111123103707@20111123105002	Chipseq standard	21 November 2011	23 November 2011	Standard chipseq of 2 saples vs IgG		Request:20111123103707
... further results

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