Template:ListUserTasks

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Task Name	Start Date	End Date	Description	Hours	Task Status	Request	Request Status
Corecosting support in November	1 November 2024	30 November 2024			Finished	Corecosting 2023	Closed
future development	1 September 2024	16 September 2024	Adding a last step after trust4		Finished	Continuous development for tapestri pipeline	Accepted
Standard analysis with DE	21 August 2024	12 September 2024			Finished	Agendo 2024BD285. GU BOKEELV_07. mRNA-seq 20 samples, mm39	Accepted
ataceseq comparison	1 August 2024	16 September 2024			Finished	ATACseq - Comparison between enzymes and buffers (GENOMICSTEST_22) 2024BD280	Accepted
RNA-seq data processing	1 August 2024	7 August 2024			Finished	RNA-seq data processing	Completed
more development	16 July 2024	16 September 2024	adapting new cluster, conversion, trust4 etc		Finished	Continuous development for tapestri pipeline	Accepted
Trimmed reads and used BBtools for counting (Bowtie or Bowtie2 didn't work) and mageck couldn't be used because sgRNA after trimming didn't start at 5' 1st position	7 June 2024	14 June 2024			Finished	Agendo 2024BD283. GU AYTESALV_02. QC of sgRNAs (GeCKO mouse library) in 2 versions.	Closed
Development and support in June	1 June 2024	30 June 2024			Finished	Qsample development 2024 Q1-Q2	Closed
Development and support - May / June	1 May 2024	30 June 2024			Finished	Daedalus development 2024 Q1-Q2	Accepted
Development and support in May	1 May 2024	31 May 2024			Finished	Qsample development 2024 Q1-Q2	Closed
Analysis_ExomeCapture_DIASMAF_03 (2024BD282)	1 May 2024	10 June 2024	see title		Finished	GU requests Q1-Q2 2024: (1) Truseq adaptors (2024BD272), (2) New kits Stranded total RNA (2024BD269), (3) Analysis_ExomeCapture_DIASMAF_03 (2024BD282), (4) ATACseq - Comparison between enzymes and buffers (2024BD280)	Accepted
Pipelins & analysis	22 April 2024	13 June 2024			Finished	(1) Transfer RNA-seq allele-spec pipeline to DSL2. (2) Methylation pipeline & data analysis.	Closed
Development and support in April	1 April 2024	30 April 2024			Finished	Qsample development 2024 Q1-Q2	Closed
Daedalus development April	1 April 2024	30 April 2024	Development during April		Finished	Daedalus development 2024 Q1-Q2	Accepted
whole analysis	12 March 2024	10 June 2024	12 samples		Finished	Xenopus oogenesis (2024BD277)	Accepted
Counting sgRNA	4 March 2024	11 March 2024	It was supposed to easy and strightforward. But the experiment was unsuccessful and we spent many hours with Irene to figure out what was going on. I still charged a standard for minimum for this analysis.		Finished	Agendo 2024BD271. GU AYTESALV_01. QC of sgRNAs (GeCKO mouse library) in 2 versions	Closed
Daedalus - Development March	1 March 2024	31 March 2024	Development		Finished	Daedalus development 2024 Q1-Q2	Accepted
Development and support in March	1 March 2024	31 March 2024			Finished	Qsample development 2024 Q1-Q2	Closed
New kits Stranded total RNA (2024BD269)	12 February 2024	10 June 2024			Finished	GU requests Q1-Q2 2024: (1) Truseq adaptors (2024BD272), (2) New kits Stranded total RNA (2024BD269), (3) Analysis_ExomeCapture_DIASMAF_03 (2024BD282), (4) ATACseq - Comparison between enzymes and buffers (2024BD280)	Accepted
2 independent analyses. STandard. They didn't ask for anything else.	12 February 2024	22 March 2024			Finished	Agendo 2024BD268. GU SANCHEZMON_02. ChIP-seq. Human	Closed
whole analysis	1 February 2024	19 March 2024			Finished	New kits Stranded total RNA (2024BD269)	Discarded
whole analysis	1 February 2024	13 March 2024			Finished	Truseq adaptors (2024BD272)	Discarded
Daedalus retaking of the project during Q1	1 February 2024	29 February 2024	Retaking of the project and different developments - February		Finished	Daedalus development 2024 Q1-Q2	Accepted
Development and support in February	1 February 2024	29 February 2024			Finished	Qsample development 2024 Q1-Q2	Closed
whole analysis	25 January 2024	14 March 2024			Finished	Setting up new technology (2023BD259)	Closed

... further results

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