Template:ListUserTasks

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Task Name	Start Date	End Date	Description	Hours	Task Status	Request	Request Status
Great work	10 July 2011	11 July 2011	Ieaaa!		{{{8}}}	One example of Request	Discarded
Reverse-engineering of bacterial gene regulatory networks					{{{8}}}	Reverse-engineering of bacterial gene regulatory networks	Closed
MET0027	26 July 2011	26 July 2011	MET0027 project QC analysis for Illumina Infinium Methylation array 27k.		{{{8}}}	MET0027	Closed
venn diagram	5 September 2011	5 September 2011	Venn diagram for 3 list of genes		{{{8}}}	Lluis Morey's chipseq (jul-2011)	Closed
Chipseq 1	1 August 2011	8 September 2011	Custom chipseq analysis following a Cell stem cell paper (Karimi MM et al. 2011)		{{{8}}}	Cosma Chipseq	Closed
The whole analysis	10 September 2011	29 September 2011			{{{8}}}	Mympn gene re-annotation	Closed
chipseq	6 September 2011	7 September 2011	- Zrf1-FLAG_24 vs Ctrl-FLAG_24 - Zrf1-FLAG_0 vs Ctrl-FLAG_0 - gene annotation x2 - gene ontology x2		{{{8}}}	Aloia's chipseq (ZRF1)	Closed
QC of input file	21 September 2011	21 September 2011	QC was performed by using fastQC tool.		{{{8}}}	Assembly of Fly genomes	Closed
fastq filtering	22 September 2011	22 September 2011	creating perl script to filter fastq file according to phred qual		{{{8}}}	Assembly of Fly genomes	Closed
Chip-seq basic analysis	12 October 2011	13 October 2011	4 samples + 1 control		{{{8}}}	DYP30 chipseq	Closed
Chipseq 1	1 September 2011	17 October 2011	Standard chipseq on 2 samples vs 2 KO		{{{8}}}	Lopez chipseq	Closed
Standard chipseq	27 July 2011	10 August 2011	2 sample vs 1 control		{{{8}}}	Lange's chipseq (phf19)	Closed
Standard chipseq	27 July 2011	5 August 2011	Standard chipseq of 2 samples vs 1 control (Ig)		{{{8}}}	Sarah Kinkley's chipseq (spok1)	Closed
Gene annotation of peaks	10 August 2011	10 August 2011			{{{8}}}	Sarah Kinkley's chipseq (spok1)	Closed
fastq filtering 2	28 September 2011	10 October 2011	Creating scripts for fastq filtering and removing "single" mate pairs		{{{8}}}	Assembly of Fly genomes	Closed
QC on filtered reads	1 October 2011	5 October 2011	QC was done with fastqc		{{{8}}}	Assembly of Fly genomes	Closed
chipseq custom overlap	14 October 2011		Size distribution of peaks. Overlap between peaks of CDPY and CK4. Overlap between peaks of CK4 and 23K4. Overlap between peaks of CK4 and MSKK4. Gene list of every sample.		{{{8}}}	DYP30 chipseq	Closed
Another try	12 July 2011	13 July 2011	Done a lot		{{{8}}}	One example of Request	Discarded
sitepro and custom sitepro	30 July 2011	5 August 2011	We used sitepro on peaks and we developed another strategy to implement a similar analysis but normalizing the signal. We compared against random TSS and random portion of the genome.		{{{8}}}	Lange's chipseq (phf19)	Closed
chipseq 1	1 August 2011	8 August 2011	Chipseq using Cosma IgG as control. Sample analyzed were Cbx6, RING_1B_KO_Cbx7 and EED_KO_Cbx7. We provided a special annotation extending the peaks to 5 kb.		{{{8}}}	Lluis Morey's chipseq (jul-2011)	Closed
chipseq 2	1 August 2011		Chipseq on EB9_RING1B, EB9_cbx4, EB9_cbx2 using EB9_IgG (EB9 cell lines). Genome of reference is mouse. We received sequences once per week...		{{{8}}}	Lluis Morey's chipseq (jul-2011)	Closed
gene-set enrichment	21 October 2011		We used david website to check for enrichment in some gene sub-groups.		{{{8}}}	DYP30 chipseq	Closed
retrieve genes on TSS	31 October 2011	3 November 2011	Researchers asked to retrieve genes with TSS overlapping the peaks and to overlap them.		{{{8}}}	DYP30 chipseq	Closed
The Bm1 role in muscle satellite cells					{{{8}}}	The Bm1 role in muscle satellite cells	Closed
Chipseq standard	21 November 2011	23 November 2011	Standard chipseq of 2 saples vs IgG		{{{8}}}	LOX chipseq	Closed

... further results

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