Template:ListUserTasks

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Task Name	Start Date	End Date	Description	Hours	Task Status	Request	Request Status
Biocore wiki support, dev and maintenance	2009-11-26	4 June 2012			Finished	Generic Wiki development & support	Closed
Proteowiki	2010-03-01	1 May 2012	Time in Proteowiki		Finished	Generic Wiki development & support	Closed
Scientific software support	2010-06-01		Support to users in the scientific software installation		Finished	Scientific software support/evaluation	Closed
Software evaluation	2010-06-01		Evaluation of the different licensed software alternatives currently present at the CRG		Finished	Scientific software support/evaluation	Closed
User support for Protein Service Wiki	2011-01-01	4 June 2012	User support for Protein Service team using the wiki		Finished	Generic Wiki development & support	Closed
User support for project-specific wikis	2011-05-01	4 June 2012			Finished	Generic Wiki development & support	Closed
Development of project-specific wikis	2011-05-01	4 June 2012			Finished	Generic Wiki development & support	Closed
Ensembl Genome/Proteome/Transcriptome: Scripts implementation	2011-07-01	31 July 2011	Implementation of the scripts to the Ensembl mirror of Genome/Proteome/Transcriptome		Finished	Database mirroring	Closed
Filtering reads	2011-07-01	31 July 2011	Filtering reads by quality. This is necessary to improve the quality of the De novo transcriptome assembly		Finished	Lynx transcriptome assemby	Closed
Great work	2011-07-10	11 July 2011	Ieaaa!		Finished	One example of Request	Discarded
Another try	2011-07-12	13 July 2011	Done a lot		Finished	One example of Request	Discarded
MET0027	2011-07-26	26 July 2011	MET0027 project QC analysis for Illumina Infinium Methylation array 27k.		Finished	MET0027	Closed
Standard chipseq	2011-07-27	10 August 2011	2 sample vs 1 control		Finished	Lange's chipseq (phf19)	Closed
Standard chipseq	2011-07-27	5 August 2011	Standard chipseq of 2 samples vs 1 control (Ig)		Finished	Sarah Kinkley's chipseq (spok1)	Closed
sitepro and custom sitepro	2011-07-30	5 August 2011	We used sitepro on peaks and we developed another strategy to implement a similar analysis but normalizing the signal. We compared against random TSS and random portion of the genome.		Finished	Lange's chipseq (phf19)	Closed
De novo transcriptome assembly (tissue-based)	2011-07-31	1 November 2011	De novo transcriptome assembly using Trinity for each tissue independently		Finished	Lynx transcriptome assemby	Closed
chipseq 2	2011-08-01		Chipseq on EB9_RING1B, EB9_cbx4, EB9_cbx2 using EB9_IgG (EB9 cell lines). Genome of reference is mouse. We received sequences once per week...		Finished	Lluis Morey's chipseq (jul-2011)	Closed
Chipseq 1	2011-08-01	8 September 2011	Custom chipseq analysis following a Cell stem cell paper (Karimi MM et al. 2011)		Finished	Cosma Chipseq	Closed
chipseq 1	2011-08-01	8 August 2011	Chipseq using Cosma IgG as control. Sample analyzed were Cbx6, RING_1B_KO_Cbx7 and EED_KO_Cbx7. We provided a special annotation extending the peaks to 5 kb.		Finished	Lluis Morey's chipseq (jul-2011)	Closed
Gene annotation of peaks	2011-08-10	10 August 2011			Finished	Sarah Kinkley's chipseq (spok1)	Closed
Chipseq 1	2011-09-01	17 October 2011	Standard chipseq on 2 samples vs 2 KO		Finished	Lopez chipseq	Closed
NCBI mirrors: Scripts implementation	2011-09-01	30 September 2011	Mirror of files at ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/. Format for Blast. Implementation of the scripts		Finished	Database mirroring	Closed
venn diagram	2011-09-05	5 September 2011	Venn diagram for 3 list of genes		Finished	Lluis Morey's chipseq (jul-2011)	Closed
chipseq	2011-09-06	7 September 2011	- Zrf1-FLAG_24 vs Ctrl-FLAG_24 - Zrf1-FLAG_0 vs Ctrl-FLAG_0 - gene annotation x2 - gene ontology x2		Finished	Aloia's chipseq (ZRF1)	Closed
The whole analysis	2011-09-10	29 September 2011			Finished	Mympn gene re-annotation	Closed

... further results

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