Revision as of 12:37, 9 January 2019

Sarah Bonnin

Professional experience:

Since October 2014: Bioinformatician at CRG Bioinformatics Unit, Barcelona, Spain.
January 2012 - October 2014: Bioinformatician at CRG Genomics Unit, Barcelona, Spain.
February 2009 - January 2012: Bioinformatician at CRG Microarray Unit, Barcelona, Spain.
January 2008 - January 2009: Bioinformatician at Institut Curie, Paris, France.

Current fields of analysis:

Transcriptomics: RNA-seq, RIP-seq, iCLIP, Microarray gene expression, High Throughput qPCR
Genomics: ChIP-seq, ATAC-seq, Ribosome profiling

Training given (all held at the CRG in Barcelona):

March-April 2018: Introduction to R. Internal CRG training.
October 2017: Introduction to statistics and R. CRG Master course.
July 2017: Introduction to R. Internal CRG training.
May 2016: Introduction to R and graphing in ggplot2. BIST Introduction to Biostatistics Course.
October 2015: Gene expression and Functional analysis. CRG Master course.
October 2012: Quality control of exome data & SNP and InDel calling in exome data. Second Generation Sequencing – Lab methods and Data Analysis.
February 2011: Introduction to R and Bioconductor. Bioinformatics workshop for PostDocs.

Trainings attended

2018:
- NGSchool2018: Nanopore sequencing & personalised medicine (40h) - Lublin, Pland.
- Network & Pathways (24h) - EMBL-EBI, Hinxton, UK.
2017:
- Interactive data analysis and visualization with R Shiny (35h), Transmitting science, Spain.
- Train the Trainer (8h) - PRBB Intervals program.
2016:
- Train the trainer; University of Ljubljana, Slovenia - ELIXIR-Slovenia.
- Sharpen your reasoning skills, PRBB Intervals program.
- Elevator pitch, PRBB Intervals program.
- Effective team playing to achieve your goals, PRBB Intervals program.
2011:
- Statistical methods for post-genomic data.
- R programming and development, EMBL, Heidelberg, Germany.
2010:
- Microarray and HTS data analysis with Bioconductor, EMBL-EBI, Hinxton, UK.
2009:
- V International course of microarray data analysis, CIPF, Valencia, Spain

University degrees:

September 2007: Masters degree in Bioinformatics from University Denis Diderot, Paris, France.
June 2005: Bachelor's degree in Biology from University Claude Bernard, Lyon, France.

@@ Line 13: / Line 13: @@
 * February 2009 - January 2012: Bioinformatician at CRG Microarray Unit, Barcelona, Spain.
 * January 2008 - January 2009: Bioinformatician at Institut Curie, Paris, France.
-<b>University degrees:</b>
-* September 2007: Masters degree in Bioinformatics from University Denis Diderot, Paris, France.
-* June 2005: Bachelor's degree in Biology from University Claude Bernard, Lyon, France.
 <b>Current fields of analysis:</b>
-* Microarray gene expression
+* Transcriptomics: RNA-seq, RIP-seq, iCLIP, Microarray gene expression, High Throughput qPCR
-* High Throughput qPCR
+* Genomics: ChIP-seq, ATAC-seq, Ribosome profiling
-* RNA-seq
+<br>
-* ChIP-seq
-* RIP-seq, iCLIP
-* Ribosome profiling
-* ATAC-seq
 <b>Training given</b> (all held at the CRG in Barcelona):
@@ Line 39: / Line 29: @@
 * February 2011: Introduction to R and Bioconductor. Bioinformatics workshop for PostDocs.
 <br>
 <b> Trainings attended </b>
 * 2018:
+** NGSchool2018: Nanopore sequencing & personalised medicine (40h) - Lublin, Pland.
 ** Network & Pathways (24h) - EMBL-EBI, Hinxton, UK.
 * 2017:
@@ Line 58: / Line 50: @@
 * 2009:
 ** V International course of microarray data analysis, CIPF, Valencia, Spain
+<br>
+<b>University degrees:</b>
+* September 2007: Masters degree in Bioinformatics from University Denis Diderot, Paris, France.
+* June 2005: Bachelor's degree in Biology from University Claude Bernard, Lyon, France.
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