Sarah Bonnin

From Bioinformatics Core Wiki

Sarah Bonnin




ORCID: 0000-0001-5159-2518

LinkedIn: sarahbonnin

Professional experience:

  • Since October 2014: Bioinformatician at CRG Bioinformatics Unit, Barcelona, Spain.
  • January 2012 - October 2014: Bioinformatician at CRG Genomics Unit, Barcelona, Spain.
  • February 2009 - January 2012: Bioinformatician at CRG Microarray Unit, Barcelona, Spain.
  • January 2008 - January 2009: Bioinformatician at Institut Curie, Paris, France.

Current fields of analysis/development:

  • Transcriptomics: RNA-seq, RIP-seq, iCLIP, Microarray gene expression, High Throughput qPCR
  • Genomics: ChIP-seq, ATAC-seq, Ribosome profiling
  • R Shiny applications development

Training given (all held at the CRG in Barcelona):

  • March-April 2018: Introduction to R. Internal CRG training.
  • October 2017: Introduction to statistics and R. CRG Master course.
  • July 2017: Introduction to R. Internal CRG training.
  • May 2016: Introduction to R and graphing in ggplot2. BIST Introduction to Biostatistics Course.
  • October 2015: Gene expression and Functional analysis. CRG Master course.
  • October 2012: Quality control of exome data & SNP and InDel calling in exome data. Second Generation Sequencing – Lab methods and Data Analysis.
  • February 2011: Introduction to R and Bioconductor. Bioinformatics workshop for PostDocs.

Trainings attended

  • 2018:
    • NGSchool2018: Nanopore sequencing & personalised medicine (40h) - Lublin, Poland.
    • Network & Pathways (24h) - EMBL-EBI, Hinxton, UK.
  • 2017:
    • Interactive data analysis and visualization with R Shiny (35h), Transmitting science, Spain.
    • Train the Trainer (8h) - PRBB Intervals program.
  • 2016:
    • Train the trainer; University of Ljubljana, Slovenia - ELIXIR-Slovenia.
    • Sharpen your reasoning skills, PRBB Intervals program.
    • Elevator pitch, PRBB Intervals program.
    • Effective team playing to achieve your goals, PRBB Intervals program.
  • 2011:
    • Statistical methods for post-genomic data.
    • R programming and development, EMBL, Heidelberg, Germany.
  • 2010:
    • Microarray and HTS data analysis with Bioconductor, EMBL-EBI, Hinxton, UK.
  • 2009:
    • V International course of microarray data analysis, CIPF, Valencia, Spain

University degrees:

  • September 2007: Masters degree in Bioinformatics from University Denis Diderot, Paris, France.
  • June 2005: Bachelor's degree in Biology from University Claude Bernard, Lyon, France.
Bioinformatics Core Facility @ CRG — 2011-2021