Difference between revisions of "User:Sbonnin"
From Bioinformatics Core Wiki
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| − | <b>Current fields of analysis:</b> | + | <b>Current fields of analysis/development:</b> |
* Transcriptomics: RNA-seq, RIP-seq, iCLIP, Microarray gene expression, High Throughput qPCR | * Transcriptomics: RNA-seq, RIP-seq, iCLIP, Microarray gene expression, High Throughput qPCR | ||
* Genomics: ChIP-seq, ATAC-seq, Ribosome profiling | * Genomics: ChIP-seq, ATAC-seq, Ribosome profiling | ||
| + | * R Shiny applications development | ||
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<b> Trainings attended </b> | <b> Trainings attended </b> | ||
* 2018: | * 2018: | ||
| − | ** NGSchool2018: Nanopore sequencing & personalised medicine (40h) - Lublin, | + | ** NGSchool2018: Nanopore sequencing & personalised medicine (40h) - Lublin, Poland. |
** Network & Pathways (24h) - EMBL-EBI, Hinxton, UK. | ** Network & Pathways (24h) - EMBL-EBI, Hinxton, UK. | ||
* 2017: | * 2017: | ||
Revision as of 12:38, 9 January 2019
Sarah Bonnin
Professional experience:
- Since October 2014: Bioinformatician at CRG Bioinformatics Unit, Barcelona, Spain.
- January 2012 - October 2014: Bioinformatician at CRG Genomics Unit, Barcelona, Spain.
- February 2009 - January 2012: Bioinformatician at CRG Microarray Unit, Barcelona, Spain.
- January 2008 - January 2009: Bioinformatician at Institut Curie, Paris, France.
Current fields of analysis/development:
- Transcriptomics: RNA-seq, RIP-seq, iCLIP, Microarray gene expression, High Throughput qPCR
- Genomics: ChIP-seq, ATAC-seq, Ribosome profiling
- R Shiny applications development
Training given (all held at the CRG in Barcelona):
- March-April 2018: Introduction to R. Internal CRG training.
- October 2017: Introduction to statistics and R. CRG Master course.
- July 2017: Introduction to R. Internal CRG training.
- May 2016: Introduction to R and graphing in ggplot2. BIST Introduction to Biostatistics Course.
- October 2015: Gene expression and Functional analysis. CRG Master course.
- October 2012: Quality control of exome data & SNP and InDel calling in exome data. Second Generation Sequencing – Lab methods and Data Analysis.
- February 2011: Introduction to R and Bioconductor. Bioinformatics workshop for PostDocs.
Trainings attended
- 2018:
- NGSchool2018: Nanopore sequencing & personalised medicine (40h) - Lublin, Poland.
- Network & Pathways (24h) - EMBL-EBI, Hinxton, UK.
- 2017:
- Interactive data analysis and visualization with R Shiny (35h), Transmitting science, Spain.
- Train the Trainer (8h) - PRBB Intervals program.
- 2016:
- Train the trainer; University of Ljubljana, Slovenia - ELIXIR-Slovenia.
- Sharpen your reasoning skills, PRBB Intervals program.
- Elevator pitch, PRBB Intervals program.
- Effective team playing to achieve your goals, PRBB Intervals program.
- 2011:
- Statistical methods for post-genomic data.
- R programming and development, EMBL, Heidelberg, Germany.
- 2010:
- Microarray and HTS data analysis with Bioconductor, EMBL-EBI, Hinxton, UK.
- 2009:
- V International course of microarray data analysis, CIPF, Valencia, Spain
University degrees:
- September 2007: Masters degree in Bioinformatics from University Denis Diderot, Paris, France.
- June 2005: Bachelor's degree in Biology from University Claude Bernard, Lyon, France.
