Difference between revisions of "User:Lcozzuto"

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|ORCID=0000-0003-3194-8892
 
|ORCID=0000-0003-3194-8892
 
|Description=Luca Cozzuto got a four year PhD in Molecular Medicine at European School of Molecular Medicine in 2009 ([http://www.semm.it]) after a five years degree in Pharmaceutical Biotechnologies at University of Naples "Federico II" in 2004.  
 
|Description=Luca Cozzuto got a four year PhD in Molecular Medicine at European School of Molecular Medicine in 2009 ([http://www.semm.it]) after a five years degree in Pharmaceutical Biotechnologies at University of Naples "Federico II" in 2004.  
During his degree thesis he studied the structure of chemically modified DNA quadruplex by using NMR together with molecular dynamics [http://www.ncbi.nlm.nih.gov/pubmed/16248036]. During the PhD he was involved in detection and characterization of bacterial RNA repeats showing a common secondary structure [http://www.ncbi.nlm.nih.gov/pubmed/18201379]. Here he learnt programming, database and website developing and a number of bioinformatics tools for detecting non coding RNAs, sequence clustering and sequence comparison. Moreover he was involved in the assembling and annotations of two bacterial genomes (sequenced by using 454 Roche platform)[http://www.ncbi.nlm.nih.gov/pubmed/21685292], in the analysis of chip-seq data (using data obtained by Illumina technology) [http://www.ncbi.nlm.nih.gov/pubmed/20875108] [http://www.cell.com/cell-stem-cell/fulltext/S1934-5909(11)00476-0] [http://www.cell.com/cell-stem-cell/retrieve/pii/S193459091100587X] in giving bioinformatic support to biological research [http://www.ncbi.nlm.nih.gov/pubmed/20439489].
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During his degree thesis he studied the structure of chemically modified DNA quadruplex by using NMR together with molecular dynamics. During the PhD he was involved in detection and characterization of bacterial RNA repeats showing a common secondary structure. Here he learnt programming, database and website developing and a number of bioinformatics tools for detecting non coding RNAs, sequence clustering and sequence comparison. He was also involved in the assembling and annotations of two bacterial genomes, in the analysis of chip-seq data and in giving bioinformatic support to biological research.
  
 
=== My work at the Bioinformatics Unit: ===
 
=== My work at the Bioinformatics Unit: ===
  
 
* Assembly and annotation of genomics and transcriptomics data
 
* Assembly and annotation of genomics and transcriptomics data
* Chip-seq, RNA-seq and clip-seq data analysis
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* Chip-seq, RNA-seq, metagenomics, small ncRNAseq and clip-seq data analysis
* Downstream analysis
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* Downstream analysis (GO enrichment, pathways analysis etc)
* Installation of genome browsers to display genome annotations
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* Installation of genome browsers
 
* Giving training for biologists and bioinformaticians
 
* Giving training for biologists and bioinformaticians
  

Revision as of 10:28, 28 June 2016

Luca Cozzuto

Lcozzuto.jpg

Bioinformatician

Email: luca.cozzuto@crg.es

Homepage(s): http://www.linkedin.com/in/cozzuto

ORCID: 0000-0003-3194-8892

Luca Cozzuto got a four year PhD in Molecular Medicine at European School of Molecular Medicine in 2009 ([1]) after a five years degree in Pharmaceutical Biotechnologies at University of Naples "Federico II" in 2004. During his degree thesis he studied the structure of chemically modified DNA quadruplex by using NMR together with molecular dynamics. During the PhD he was involved in detection and characterization of bacterial RNA repeats showing a common secondary structure. Here he learnt programming, database and website developing and a number of bioinformatics tools for detecting non coding RNAs, sequence clustering and sequence comparison. He was also involved in the assembling and annotations of two bacterial genomes, in the analysis of chip-seq data and in giving bioinformatic support to biological research.

My work at the Bioinformatics Unit:

  • Assembly and annotation of genomics and transcriptomics data
  • Chip-seq, RNA-seq, metagenomics, small ncRNAseq and clip-seq data analysis
  • Downstream analysis (GO enrichment, pathways analysis etc)
  • Installation of genome browsers
  • Giving training for biologists and bioinformaticians


Luca Cozzuto may be contacted by email at mailto:luca.cozzuto@crg.es

Bioinformatics Core Facility @ CRG — 2011-2024