Difference between revisions of "Template:ListUserTasks"

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Revision as of 10:08, 4 September 2015

[[{{{1}}}]]

Task Name Start Date End Date Description Hours Task Status Request Request Status

Biocore wiki support, dev and maintenance 26 November 2009 4 June 2012
Finished Generic Wiki development & support Closed

Proteowiki 1 March 2010 1 May 2012
Time in Proteowiki
Finished Generic Wiki development & support Closed

Scientific software support 1 June 2010
Support to users in the scientific software installation
Finished Scientific software support/evaluation Closed

Software evaluation 1 June 2010
Evaluation of the different licensed software alternatives currently present at the CRG
Finished Scientific software support/evaluation Closed

User support for Protein Service Wiki 1 January 2011 4 June 2012
User support for Protein Service team using the wiki
Finished Generic Wiki development & support Closed

User support for project-specific wikis 1 May 2011 4 June 2012
Finished Generic Wiki development & support Closed

Development of project-specific wikis 1 May 2011 4 June 2012
Finished Generic Wiki development & support Closed

Ensembl Genome/Proteome/Transcriptome: Scripts implementation 1 July 2011 31 July 2011
Implementation of the scripts to the Ensembl mirror of Genome/Proteome/Transcriptome
Finished Database mirroring Closed

Filtering reads 1 July 2011 31 July 2011
Filtering reads by quality. This is necessary to improve the quality of the De novo transcriptome assembly
Finished Lynx transcriptome assemby Closed

Great work 10 July 2011 11 July 2011
Ieaaa!
Finished One example of Request Discarded

Another try 12 July 2011 13 July 2011
Done a lot
Finished One example of Request Discarded

MET0027 26 July 2011 26 July 2011
MET0027 project QC analysis for Illumina Infinium Methylation array 27k.
Finished MET0027 Closed

Standard chipseq 27 July 2011 10 August 2011
2 sample vs 1 control
Finished Lange's chipseq (phf19) Closed

Standard chipseq 27 July 2011 5 August 2011
Standard chipseq of 2 samples vs 1 control (Ig)
Finished Sarah Kinkley's chipseq (spok1) Closed

sitepro and custom sitepro 30 July 2011 5 August 2011
We used sitepro on peaks and we developed another strategy to implement a similar analysis but normalizing the signal. We compared against random TSS and random portion of the genome.
Finished Lange's chipseq (phf19) Closed

De novo transcriptome assembly (tissue-based) 31 July 2011 1 November 2011
De novo transcriptome assembly using Trinity for each tissue independently
Finished Lynx transcriptome assemby Closed

chipseq 1 1 August 2011 8 August 2011
Chipseq using Cosma IgG as control. Sample analyzed were Cbx6, RING_1B_KO_Cbx7 and EED_KO_Cbx7. We provided a special annotation extending the peaks to 5 kb.
Finished Lluis Morey's chipseq (jul-2011) Closed

chipseq 2 1 August 2011
Chipseq on EB9_RING1B, EB9_cbx4, EB9_cbx2 using EB9_IgG (EB9 cell lines). Genome of reference is mouse. We received sequences once per week...
Finished Lluis Morey's chipseq (jul-2011) Closed

Chipseq 1 1 August 2011 8 September 2011
Custom chipseq analysis following a Cell stem cell paper (Karimi MM et al. 2011)
Finished Cosma Chipseq Closed

Gene annotation of peaks 10 August 2011 10 August 2011
Finished Sarah Kinkley's chipseq (spok1) Closed

Chipseq 1 1 September 2011 17 October 2011
Standard chipseq on 2 samples vs 2 KO
Finished Lopez chipseq Closed

NCBI mirrors: Scripts implementation 1 September 2011 30 September 2011
Mirror of files at ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/. Format for Blast. Implementation of the scripts
Finished Database mirroring Closed

venn diagram 5 September 2011 5 September 2011
Venn diagram for 3 list of genes
Finished Lluis Morey's chipseq (jul-2011) Closed

chipseq 6 September 2011 7 September 2011
- Zrf1-FLAG_24 vs Ctrl-FLAG_24

- Zrf1-FLAG_0 vs Ctrl-FLAG_0 - gene annotation x2

- gene ontology x2
Finished Aloia's chipseq (ZRF1) Closed

The whole analysis 10 September 2011 29 September 2011
Finished Mympn gene re-annotation Closed

... further results
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