Difference between revisions of "Template:ListUserTasks"
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Revision as of 15:22, 20 September 2013
[[{{{1}}}]]
| Task Name | Start Date | End Date | Description | Hours | Task Status | Request | Request Status
|
|---|---|---|---|---|---|---|---|
| Great work | 10 July 2011 | 11 July 2011 | Ieaaa!
|
Finished | One example of Request | Discarded
| |
| Another try | 12 July 2011 | 13 July 2011 | Done a lot
|
Finished | One example of Request | Discarded
| |
| MET0027 | 26 July 2011 | 26 July 2011 | MET0027 project
QC analysis for Illumina Infinium Methylation array 27k.
|
Finished | MET0027 | Closed
| |
| Filtering reads | 1 July 2011 | 31 July 2011 | Filtering reads by quality. This is necessary to improve the quality of the De novo transcriptome assembly
|
Finished | Lynx transcriptome assemby | Closed
| |
| Ensembl Genome/Proteome/Transcriptome: Scripts implementation | 1 July 2011 | 31 July 2011 | Implementation of the scripts to the Ensembl mirror of Genome/Proteome/Transcriptome
|
Finished | Database mirroring | Closed
| |
| Standard chipseq | 27 July 2011 | 5 August 2011 | Standard chipseq of 2 samples vs 1 control (Ig)
|
Finished | Sarah Kinkley's chipseq (spok1) | Closed
| |
| sitepro and custom sitepro | 30 July 2011 | 5 August 2011 | We used sitepro on peaks and we developed another strategy to implement a similar analysis but normalizing the signal. We compared against random TSS and random portion of the genome.
|
Finished | Lange's chipseq (phf19) | Closed
| |
| chipseq 1 | 1 August 2011 | 8 August 2011 | Chipseq using Cosma IgG as control. Sample analyzed were Cbx6, RING_1B_KO_Cbx7 and EED_KO_Cbx7. We provided a special annotation extending the peaks to 5 kb.
|
Finished | Lluis Morey's chipseq (jul-2011) | Closed
| |
| Standard chipseq | 27 July 2011 | 10 August 2011 | 2 sample vs 1 control
|
Finished | Lange's chipseq (phf19) | Closed
| |
| Gene annotation of peaks | 10 August 2011 | 10 August 2011 | Finished | Sarah Kinkley's chipseq (spok1) | Closed
| ||
| venn diagram | 5 September 2011 | 5 September 2011 | Venn diagram for 3 list of genes
|
Finished | Lluis Morey's chipseq (jul-2011) | Closed
| |
| chipseq | 6 September 2011 | 7 September 2011 | - Zrf1-FLAG_24 vs Ctrl-FLAG_24
- Zrf1-FLAG_0 vs Ctrl-FLAG_0 - gene annotation x2 - gene ontology x2 |
Finished | Aloia's chipseq (ZRF1) | Closed
| |
| Chipseq 1 | 1 August 2011 | 8 September 2011 | Custom chipseq analysis following a Cell stem cell paper (Karimi MM et al. 2011)
|
Finished | Cosma Chipseq | Closed
| |
| QC of input file | 21 September 2011 | 21 September 2011 | QC was performed by using fastQC tool.
|
Finished | Assembly of Fly genomes | Closed
| |
| fastq filtering | 22 September 2011 | 22 September 2011 | creating perl script to filter fastq file according to phred qual
|
Finished | Assembly of Fly genomes | Closed
| |
| The whole analysis | 10 September 2011 | 29 September 2011 | Finished | Mympn gene re-annotation | Closed
| ||
| NCBI mirrors: Scripts implementation | 1 September 2011 | 30 September 2011 | Mirror of files at ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/. Format for Blast. Implementation of the scripts
|
Finished | Database mirroring | Closed
| |
| QC on filtered reads | 1 October 2011 | 5 October 2011 | QC was done with fastqc
|
Finished | Assembly of Fly genomes | Closed
| |
| fastq filtering 2 | 28 September 2011 | 10 October 2011 | Creating scripts for fastq filtering and removing "single" mate pairs
|
Finished | Assembly of Fly genomes | Closed
| |
| Chip-seq basic analysis | 12 October 2011 | 13 October 2011 | 4 samples + 1 control
|
Finished | DYP30 chipseq | Closed
| |
| Chipseq 1 | 1 September 2011 | 17 October 2011 | Standard chipseq on 2 samples vs 2 KO
|
Finished | Lopez chipseq | Closed
| |
| De novo transcriptome assembly (tissue-based) | 31 July 2011 | 1 November 2011 | De novo transcriptome assembly using Trinity for each tissue independently
|
Finished | Lynx transcriptome assemby | Closed
| |
| retrieve genes on TSS | 31 October 2011 | 3 November 2011 | Researchers asked to retrieve genes with TSS overlapping the peaks and to overlap them.
|
Finished | DYP30 chipseq | Closed
| |
| Chipseq standard | 21 November 2011 | 23 November 2011 | Standard chipseq of 2 saples vs IgG
|
Finished | LOX chipseq | Closed
| |
| Peak annotation | 25 November 2011 | 25 November 2011 | standard analysis
|
Finished | LOX chipseq | Closed
|
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