Difference between revisions of "HumMeth27QCReport"
From Bioinformatics Core Wiki
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| − | :* | + | == HM27QC == |
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| + | HM27QC is an R script that permits to have a quick overview of the quality of Illumina’s Infinium HumanMethylation27 BeadChip methylation assay experiment. | ||
| + | |||
| + | It takes in input the three files from BeadStudio: | ||
| + | * '''Sample table''' (it is compulsory that the file name contains the word "Sample", case sensitive, and not the others reserved words) | ||
| + | * '''Control table''' (it is compulsory that the file name contains the word "Control", case sensitive, and not the others reserved words) | ||
| + | * '''BetaAverage table''' (it is compulsory that the file name contains the word "Avg", case sensitive, and not the others reserved words) | ||
| + | |||
This software is distributed only for non-commercial purposes and only for acedemic use. | This software is distributed only for non-commercial purposes and only for acedemic use. | ||
For any question please contact Francesco Mancuso ([mailto:francesco.mancuso@crg.es mail]) | For any question please contact Francesco Mancuso ([mailto:francesco.mancuso@crg.es mail]) | ||
Revision as of 14:08, 9 September 2010
HM27QC
HM27QC is an R script that permits to have a quick overview of the quality of Illumina’s Infinium HumanMethylation27 BeadChip methylation assay experiment.
It takes in input the three files from BeadStudio:
- Sample table (it is compulsory that the file name contains the word "Sample", case sensitive, and not the others reserved words)
- Control table (it is compulsory that the file name contains the word "Control", case sensitive, and not the others reserved words)
- BetaAverage table (it is compulsory that the file name contains the word "Avg", case sensitive, and not the others reserved words)
This software is distributed only for non-commercial purposes and only for acedemic use.
For any question please contact Francesco Mancuso (mail)
