Revision as of 14:36, 31 October 2012

Galaxy (http://wiki.g2.bx.psu.edu) is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

Accessible: Users without programming experience can easily specify parameters and run tools and workflows.
Reproducible: Galaxy captures information so that any user can repeat and understand a complete computational analysis.
Transparent: Users share and publish analyses via the web and create Pages, interactive, web-based documents that describe a complete analysis.

CRG local implementation

We are currently working in the implementation of a local Galaxy instance containing bioinformatics tools developed in-house (Gem, T-Coffee and TrimAl etc) in addition to some of the tools in the Galaxy tool shed. This local Galaxy implementation will run the jobs on a cluster of 72 cores and 48GB per node.

Hardware schema of the CRG-Galaxy implementation

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 = CRG local implementation =
-Very soon will be available to all CRG users a local implementation of Galaxy including bioinformatics tools develloped in the CRG (Gem, T-Coffee and TrimAl for examples) as well as all tools provided by the central Galaxy. In order to protect data, CRG-Galaxy will only be available from the CRG network as describe in the Hardware schema. Data will be stored on the CRG file servers and all computations will run on a cluster of 72 cores and 48GB per node.
+We are currently working in the implementation of a local Galaxy instance containing bioinformatics tools developed in-house (Gem, T-Coffee and TrimAl etc) in addition to some of the tools in the Galaxy tool shed. This local Galaxy implementation will run the jobs on a cluster of 72 cores and 48GB per node.
 [[File:CRG-Galaxy-2.png|900px|snapshot of the CRG-Galaxy welcome page]]

Difference between revisions of "Galaxy"

Revision as of 14:36, 31 October 2012

CRG local implementation

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