Difference between revisions of "Galaxy"

From Bioinformatics Core Wiki
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= CRG local implementation =
 
= CRG local implementation =
  
We are currently developing a local implementation of Galaxy including all tools provided by the central Galaxy, plus bioinformatic softwares and scripts develloped in the CRG (Gem, T-Coffee and TrimAl for examples).  
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Very soon will be available to all CRG users a local implementation of Galaxy including bioinformatics tools develloped in the CRG (Gem, T-Coffee and TrimAl for examples) as well as all tools provided by the central Galaxy. In order to protect data, CRG-Galaxy will only be available from the CRG network as describe in the Hardware schema. Data will be stored on the CRG file servers and all computations will run on a cluster of 72 computers.
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[[File:CRG-Galaxy-2.png|900px|snapshot of the CRG-Galaxy welcome page]]
  
[[File:CRG-Galaxy-2.png|thumb|snapshot of the CRG-Galaxy welcome page]]
 
  
Galaxy will be only available to CRG users from the CRG network as describe in figure. Input/output data are stored on the CRG file servers and all computations run on a cluster of 72 computers.
 
  
 
[[File:HardWare_Schema.png|thumb|Hardware schema of the CRG-Galaxy implementation]]
 
[[File:HardWare_Schema.png|thumb|Hardware schema of the CRG-Galaxy implementation]]

Revision as of 11:50, 31 October 2012

Galaxy (http://wiki.g2.bx.psu.edu) is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  1. Accessible: Users without programming experience can easily specify parameters and run tools and workflows.
  2. Reproducible: Galaxy captures information so that any user can repeat and understand a complete computational analysis.
  3. Transparent: Users share and publish analyses via the web and create Pages, interactive, web-based documents that describe a complete analysis.

CRG local implementation

Very soon will be available to all CRG users a local implementation of Galaxy including bioinformatics tools develloped in the CRG (Gem, T-Coffee and TrimAl for examples) as well as all tools provided by the central Galaxy. In order to protect data, CRG-Galaxy will only be available from the CRG network as describe in the Hardware schema. Data will be stored on the CRG file servers and all computations will run on a cluster of 72 computers.

snapshot of the CRG-Galaxy welcome page


Hardware schema of the CRG-Galaxy implementation
Bioinformatics Core Facility @ CRG — 2011-2024