Difference between revisions of "ServicesBlocks"
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| − | |Title= | + | |Title=OVERVIEW |
| − | |Description= | + | |Description=The CRG Bioinformatics Core facility provides researchers at CRG-CNAG/PRBB and external organizations, both academic and commercial, with services of consultation, planning NGS and other genomic experiments, NGS data processing, analysis and management, software and database development, bioinformatics training, and access to high-performance computing resources at CRG. |
| + | BioCore works in synergy with the other CRG core facilities, including [http://www.crg.eu/en/programmes-groups/genomics-unit Genomics Unit] and [http://www.crg.eu/en/programmes-groups/biomolecular-screening-protein-technologies-unit Biomolecular Screening & Protein Technologies Unit], to support users through all steps of services that include high-throughput sequencing, from an experiment planning to delivery of timely and reliable results. | ||
| + | In addition to services provided for fee, we support fully collaborative grant-funded investigations. This includes preliminary data analysis, planning the grant budget and experiments provided by the CRG Genomics Unit, writing relevant sections of the proposal, data analysis and biological inference, custom software development, and co-authored dissemination of the grant results. | ||
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Revision as of 09:14, 26 August 2016
Contents
Basic services
- Consultation on bioinformatics methods and resources
- Software evaluation, implementation, and training
- Customization of bioinformatics resources
- Training on different bioinformatics topics
Data analysis
- High-throughput data analysis of genomics, transcriptomics, epigenetics and proteomics datasets
- Next-Gen data analysis. The unit has invested time and effort in establishing several pipelines dedicated to the analysis of Deep-sequencing data. Currently, the unit has experience analyzing different types of deep-sequencing data:
Functional Elements Identification
- Automatic gene annotation (including non-coding genes)
- Functional annotation of protein coding genes
- Regulatory sequences: DNA motif analysis (novel and known)
Software and Data Management
- Database design and development
- Web interface development
- Development of versatile ticketing and project management systems based on wiki technologies
- Implementation of integrative bioinformatics web applications
- Implementation of customized Genome browsers
- Database design and development
- Web interface development
- Development of versatile ticketing and project management systems based on wiki technologies
- Implementation of integrative bioinformatics web applications
- Implementation of customized Genome browsers
- Support for submission of raw data to public repository
- Database design and development
- Web interface development
- Development of versatile ticketing and project management systems based on wiki technologies
- Implementation of integrative bioinformatics web applications
- Implementation of customized Genome browsers
- Support for submission of raw data to public repository
- Database design and development
- Web interface development
- Development of versatile ticketing and project management systems based on wiki technologies
- Implementation of integrative bioinformatics web applications
- Implementation of customized Genome browsers
- Support for submission of raw data to public repository
* Database design and development
- Web interface development
- Development of versatile ticketing and project management systems based on wiki technologies
- Implementation of integrative bioinformatics web applications
- Implementation of customized Genome browsers
- Support for submission of raw data to public repository
S* Database design and development
- Web interface development
- Development of versatile ticketing and project management systems based on wiki technologies
- Implementation of integrative bioinformatics web applications
- Implementation of customized Genome browsers
- Support for submission of raw data to public repositorieupport for submission of raw data to public repositories (ENA, SRA, GEO..)
OVERVIEW
The CRG Bioinformatics Core facility provides researchers at CRG-CNAG/PRBB and external organizations, both academic and commercial, with services of consultation, planning NGS and other genomic experiments, NGS data processing, analysis and management, software and database development, bioinformatics training, and access to high-performance computing resources at CRG. BioCore works in synergy with the other CRG core facilities, including Genomics Unit and Biomolecular Screening & Protein Technologies Unit, to support users through all steps of services that include high-throughput sequencing, from an experiment planning to delivery of timely and reliable results. In addition to services provided for fee, we support fully collaborative grant-funded investigations. This includes preliminary data analysis, planning the grant budget and experiments provided by the CRG Genomics Unit, writing relevant sections of the proposal, data analysis and biological inference, custom software development, and co-authored dissemination of the grant results.
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